Transcript: ENST00000439128.2 NEK1-001

Description

NIMA-related kinase 1 [Source:HGNC Symbol;Acc:7744]

Gene Synonyms

KIAA1901, NY-REN-55, SRPS2, SRPS2A

Location

Chromosome 4: 170,314,426-170,533,763 reverse strand.

About this transcript

This transcript has 34 exons, is annotated with 23 domains and features, is associated with 92467 variant alleles and maps to 1106 oligo probes.

Gene

This transcript is a product of gene ENSG00000137601.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000507142.1	NEK1-004	5556	1286aa	ENSP00000424757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56351	Q5JXL9 Q96PY6	NM_001199397.1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000439128.2	NEK1-001	5653	1258aa	ENSP00000408020.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47162	Q5JXL9 Q96PY6	NM_012224.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000511633.1	NEK1-003	5536	1242aa	ENSP00000423332.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56350	Q5JXL9 Q96PY6	NM_001199398.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000510533.1	NEK1-002	5377	1214aa	ENSP00000427653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56349	Q5JXL9 Q96PY6	NM_001199400.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512193.1	NEK1-005	4430	1189aa	ENSP00000424938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56348	Q5JXL9 Q96PY6	NM_001199399.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000505119.1	NEK1-008	688	123aa	ENSP00000421525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000510108.1	NEK1-006	1304	45aa	ENSP00000424152.1	Nonsense mediated decay		D6RBG5	-	-
ENST00000509912.1	NEK1-007	2971	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 34, Coding exons: 33, Transcript length: 5,653 bps, Translation length: 1,258 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96PY6

CCDS

This transcript is a member of the Human CCDS set: CCDS47162

Version

ENST00000439128.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000363157 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Transcript: ENST00000439128.2 NEK1-001

Summary