Transcript: ENST00000422266.1 MDC1-004

Description

mediator of DNA-damage checkpoint 1 [Source:HGNC Symbol;Acc:21163]

Gene Synonyms

Em:AB023051.5, KIAA0170, NFBD1

Location

Chromosome 6: 30,681,757-30,684,898 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 8 domains and features, is associated with 1137 variant alleles and maps to 1135 oligo probes.

Gene

This transcript is a product of gene ENSG00000137337.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376406.3	MDC1-001	7576	2089aa	ENSP00000365588.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34384	A1Z5I7 A1Z5I9 A2AB05 A2AB06 A2AB07 Q14676	NM_014641.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376405.2	MDC1-201	6575	1825aa	ENSP00000365587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I7 A1Z5I9 A2AB05 A2AB06 A2AB07 Q14676	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417033.1	MDC1-006	916	306aa	ENSP00000408962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000422266.1	MDC1-004	583	113aa	ENSP00000411310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000416571.1	MDC1-003	582	162aa	ENSP00000400979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB05 A2AB06 A2AB07	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425072.1	MDC1-002	582	126aa	ENSP00000396989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB06 A2AB07	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494654.1	MDC1-005	148	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489540.1	MDC1-008	1402	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492462.1	MDC1-007	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 583 bps, Translation length: 113 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000422266.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000257583 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000422266.1 MDC1-004

Summary