Transcript: ENST00000376406.3 MDC1-001

Description

mediator of DNA-damage checkpoint 1 [Source:HGNC Symbol;Acc:21163]

Gene Synonyms

Em:AB023051.5, KIAA0170, NFBD1

Location

Chromosome 6: 30,667,584-30,685,666 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 22 domains and features, is associated with 8635 variant alleles and maps to 3785 oligo probes.

Gene

This transcript is a product of gene ENSG00000137337.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000376406.3	MDC1-001	7576	2089aa	ENSP00000365588.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34384	A1Z5I7 A1Z5I9 A2AB05 A2AB06 A2AB07 Q14676	NM_014641.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000376405.2	MDC1-201	6575	1825aa	ENSP00000365587.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I7 A1Z5I9 A2AB05 A2AB06 A2AB07 Q14676	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000417033.1	MDC1-006	916	306aa	ENSP00000408962.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000422266.1	MDC1-004	583	113aa	ENSP00000411310.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB06	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000416571.1	MDC1-003	582	162aa	ENSP00000400979.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB05 A2AB06 A2AB07	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000425072.1	MDC1-002	582	126aa	ENSP00000396989.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A1Z5I9 A2AB06 A2AB07	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000494654.1	MDC1-005	148	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000489540.1	MDC1-008	1402	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000492462.1	MDC1-007	819	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 7,576 bps, Translation length: 2,089 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q14676

CCDS

This transcript is a member of the Human CCDS set: CCDS34384

Version

ENST00000376406.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000076103 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000376406.3 MDC1-001

Summary