Transcript: ENST00000258962.4 SRSF1-001

Description

serine/arginine-rich splicing factor 1 [Source:HGNC Symbol;Acc:10780]

Gene Synonyms

ASF, MGC5228, SF2, SF2P33, SF2p33, SFRS1, SRp30a

Location

Chromosome 17: 56,082,210-56,084,707 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 1405 variant alleles and maps to 286 oligo probes.

Gene

This transcript is a product of gene ENSG00000136450.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000582730.2	SRSF1-003	3117	201aa	ENSP00000462215.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58580	J3QQV5 Q07955 Q59FA2	NM_001078166.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000258962.4	SRSF1-001	1513	248aa	ENSP00000258962.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11600	J3QQV5 Q07955	NM_006924.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584773.1	SRSF1-002	1317	253aa	ENSP00000463042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTL2 J3QQV5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000585096.1	SRSF1-006	568	73aa	ENSP00000462687.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSW7 J3QQV5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000581979.1	SRSF1-004	1720	201aa	ENSP00000463223.1	Nonsense mediated decay	CCDS58580	J3QQV5 Q07955 Q59FA2	-	-
ENST00000583741.1	SRSF1-005	1465	65aa	ENSP00000463917.1	Nonsense mediated decay		J3QQV5	-	-
ENST00000584668.1	SRSF1-008	758	143aa	ENSP00000462616.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000581497.1	SRSF1-009	438	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000578430.1	SRSF1-007	689	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,513 bps, Translation length: 248 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q07955

CCDS

This transcript is a member of the Human CCDS set: CCDS11600

Version

ENST00000258962.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000443335 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000258962.4 SRSF1-001

Summary