Transcript: ENST00000539011.1 CIB2-002

Description

calcium and integrin binding family member 2 [Source:HGNC Symbol;Acc:24579]

Gene Synonyms

DFNB48, KIP2, USH1J

Location

Chromosome 15: 78,396,991-78,423,877 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 13 domains and features, is associated with 11399 variant alleles and maps to 386 oligo probes.

Gene

This transcript is a product of gene ENSG00000136425.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258930.3	CIB2-001	1598	187aa	ENSP00000258930.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10296	H0YLX3 O75838 Q05BT6	NM_006383.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539011.1	CIB2-002	1511	144aa	ENSP00000442459.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61722	H0YLX3 Q05BT6	NM_001271888.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000557846.1	CIB2-006	934	138aa	ENSP00000453488.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61723	H0YM71	NM_001271889.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000560618.1	CIB2-005	804	167aa	ENSP00000452752.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKC8 H0YLX3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000559645.1	CIB2-009	462	147aa	ENSP00000452980.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YKX8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000559054.1	CIB2-003	443	54aa	ENSP00000453377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLX3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000561190.1	CIB2-008	390	126aa	ENSP00000453256.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YLL7 H0YLX3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000557818.1	CIB2-004	669	48aa	ENSP00000453654.1	Nonsense mediated decay		H0YML3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557917.1	CIB2-007	535	92aa	ENSP00000453963.1	Nonsense mediated decay		H0YND4	-	-

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 1,511 bps, Translation length: 144 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS61722

Version

ENST00000539011.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000419331 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000539011.1 CIB2-002

Summary