Transcript: ENST00000496510.2 PCNXL2-020

Description

pecanex-like 2 (Drosophila) [Source:HGNC Symbol;Acc:8736]

Gene Synonyms

FLJ11383, KIAA0435

Location

Chromosome 1: 233,275,572-233,316,848 reverse strand.

About this transcript

This transcript has 6 exons, is associated with 16826 variant alleles and maps to 143 oligo probes.

Gene

This transcript is a product of gene ENSG00000135749.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000258229.9	PCNXL2-002	7518	2137aa	ENSP00000258229.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44335	A6NKB5 B3KNZ5	NM_014801.3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344698.2	PCNXL2-001	5348	777aa	ENSP00000340759.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NKB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430153.1	PCNXL2-201	3199	286aa	ENSP00000394703.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A6NKB5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000488780.2	PCNXL2-010	1465	424aa	ENSP00000430820.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EVZ6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000484347.1	PCNXL2-011	803	178aa	ENSP00000428134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YAV6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000518351.1	PCNXL2-019	545	181aa	ENSP00000429231.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YBD1	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000462233.1	PCNXL2-007	3392	490aa	ENSP00000428488.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475463.2	PCNXL2-005	2183	218aa	ENSP00000429360.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000486012.1	PCNXL2-012	654	47aa	ENSP00000428582.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000490102.2	PCNXL2-022	561	109aa	ENSP00000427962.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000517808.1	PCNXL2-018	307	45aa	ENSP00000429262.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000520463.1	PCNXL2-021	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467336.2	PCNXL2-008	747	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496675.1	PCNXL2-015	598	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000496510.2	PCNXL2-020	551	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000462762.1	PCNXL2-016	383	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000324142.4	PCNXL2-003	1828	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000497623.1	PCNXL2-014	639	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484041.1	PCNXL2-013	625	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522067.1	PCNXL2-024	569	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000429988.2	PCNXL2-023	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498302.1	PCNXL2-009	486	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000519530.1	PCNXL2-017	439	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 551 bps,

Version

ENST00000496510.2

Type

Processed transcript

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000381317 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000496510.2 PCNXL2-020

Summary