Transcript: ENST00000257909.3 TROAP-001

Description

trophinin associated protein [Source:HGNC Symbol;Acc:12327]

Gene Synonyms

TASTIN

Location

Chromosome 12: 49,717,062-49,725,514 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 7 domains and features, is associated with 4351 variant alleles and maps to 560 oligo probes.

Gene

This transcript is a product of gene ENSG00000135451.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000551245.1	TROAP-003	2771	868aa	ENSP00000447509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W052 F8W130	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000257909.3	TROAP-001	2527	778aa	ENSP00000257909.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8784	F8W052 Q12815	NM_005480.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547923.1	TROAP-008	1652	457aa	ENSP00000447421.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W1U0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000547807.1	TROAP-016	915	290aa	ENSP00000446646.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W052 F8W1E3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549534.1	TROAP-010	839	52aa	ENSP00000449032.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXV6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550709.1	TROAP-009	778	126aa	ENSP00000449984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VXF3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000380327.5	TROAP-002	675	144aa	ENSP00000369684.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41779	Q12815	NM_001100620.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000550346.1	TROAP-015	640	180aa	ENSP00000449588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVS4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000548311.1	TROAP-005	623	126aa	ENSP00000448313.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS61117	F8VSF9	NM_001278324.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551567.1	TROAP-014	577	114aa	ENSP00000447244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W052	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000549275.1	TROAP-013	348	68aa	ENSP00000449866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8VVX4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000551192.1	TROAP-007	1469	158aa	ENSP00000450306.1	Nonsense mediated decay		B7Z5Q9 F8W052	-	-
ENST00000546735.1	TROAP-006	1213	53aa	ENSP00000447876.1	Nonsense mediated decay		F8VR46	-	-
ENST00000546776.1	TROAP-011	1011	87aa	ENSP00000449245.1	Nonsense mediated decay		F8VVT5	-	-
ENST00000549891.1	TROAP-004	932	53aa	ENSP00000446564.1	Nonsense mediated decay		F8VR46	-	-
ENST00000548817.1	TROAP-012	480	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 2,527 bps, Translation length: 778 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12815

CCDS

This transcript is a member of the Human CCDS set: CCDS8784

Version

ENST00000257909.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000404300 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000257909.3 TROAP-001

Summary