Transcript: ENST00000307851.4 HAVCR2-001

Description

hepatitis A virus cellular receptor 2 [Source:HGNC Symbol;Acc:18437]

Gene Synonyms

FLJ14428, HAVcr-2, KIM-3, TIM3, TIMD-3, TIMD3, Tim-3

Location

About this transcript

This transcript has 7 exons, is annotated with 12 domains and features, is associated with 10761 variant alleles and maps to 450 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000307851.4	HAVCR2-001	2907	301aa	ENSP00000312002.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4333	E5RFR4 Q8TDQ0	NM_032782.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000522593.1	HAVCR2-004	975	273aa	ENSP00000430873.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RHN3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000524219.1	HAVCR2-007	566	74aa	ENSP00000430328.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RFR4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517358.1	HAVCR2-005	566	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000522902.1	HAVCR2-002	1010	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000521665.1	HAVCR2-006	795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 2,907 bps, Translation length: 301 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8TDQ0

CCDS

This transcript is a member of the Human CCDS set: CCDS4333

Version

ENST00000307851.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252574 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.