Transcript: ENST00000309836.5 SPIRE1-005

Description

spire-type actin nucleation factor 1 [Source:HGNC Symbol;Acc:30622]

Gene Synonyms

KIAA1135, SPIR1, Spir-1, spir-1

Location

Chromosome 18: 12,449,503-12,656,731 reverse strand.

About this transcript

This transcript has 15 exons, is annotated with 12 domains and features, is associated with 87891 variant alleles and maps to 384 oligo probes.

Gene

This transcript is a product of gene ENSG00000134278.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000409402.4	SPIRE1-001	5665	756aa	ENSP00000387266.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45829	C9JYR7 K7EQR2 Q08AE8 Q96AS4	NM_001128626.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000410092.3	SPIRE1-002	5533	742aa	ENSP00000387226.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32790	C9JYR7 J3KQR5 K7EQR2 Q08AE8 Q96AS4	NM_020148.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000453447.2	SPIRE1-010	2107	622aa	ENSP00000407050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45830	C9JYR7 J3KQR5 K7EQR2 Q96AS4	NM_001128627.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000383356.2	SPIRE1-201	1901	458aa	ENSP00000372847.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q08AE8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000309836.5	SPIRE1-005	1877	545aa	ENSP00000309661.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KNG6 Q96AS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449797.1	SPIRE1-006	701	197aa	ENSP00000401392.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JYR7 K7EQR2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000497844.2	SPIRE1-011	546	147aa	ENSP00000467103.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7ENV1 K7EQR2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000462226.1	SPIRE1-004	536	122aa	ENSP00000467943.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EQR2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000440472.2	SPIRE1-003	2109	458aa	ENSP00000404752.1	Nonsense mediated decay		Q08AE8	-	-
ENST00000592156.1	SPIRE1-012	863	122aa	ENSP00000466531.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000464481.1	SPIRE1-008	1264	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487491.1	SPIRE1-007	548	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498803.1	SPIRE1-009	587	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000588236.1	SPIRE1-013	484	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 1,877 bps, Translation length: 545 residues

Version

ENST00000309836.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000333113 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000309836.5 SPIRE1-005

Summary