Transcript: ENST00000438666.2 SPG20-002

Description

spastic paraplegia 20 (Troyer syndrome) [Source:HGNC Symbol;Acc:18514]

Gene Synonyms

KIAA0610, SPARTIN, TAHCCP1

Location

Chromosome 13: 36,875,775-36,920,420 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 12 domains and features, is associated with 19011 variant alleles and maps to 607 oligo probes.

Gene

This transcript is a product of gene ENSG00000133104.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000451493.1	SPG20-202	4944	666aa	ENSP00000414147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142295.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000355182.4	SPG20-201	4820	666aa	ENSP00000347314.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142294.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438666.2	SPG20-002	4789	666aa	ENSP00000406061.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_015087.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000494062.2	SPG20-010	3018	666aa	ENSP00000473599.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9356	Q8N0X7	NM_001142296.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000495510.1	SPG20-003	2001	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000494703.1	SPG20-011	796	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000475603.1	SPG20-008	675	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000491805.1	SPG20-006	668	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000482146.1	SPG20-007	583	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000460126.1	SPG20-005	392	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476377.1	SPG20-009	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 4,789 bps, Translation length: 666 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q8N0X7

CCDS

This transcript is a member of the Human CCDS set: CCDS9356

Version

ENST00000438666.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000044494 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000438666.2 SPG20-002

Summary