Transcript: ENST00000254846.5 KDM6B-001

Description

lysine (K)-specific demethylase 6B [Source:HGNC Symbol;Acc:29012]

Gene Synonyms

JMJD3, KIAA0346

Location

About this transcript

This transcript has 22 exons, is annotated with 30 domains and features, is associated with 10204 variant alleles and maps to 1224 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254846.5	KDM6B-001	6713	1682aa	ENSP00000254846.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32552	D3DTQ7 O15054	NM_001080424.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000448097.2	KDM6B-002	5422	1643aa	ENSP00000412513.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O15054	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000570632.1	KDM6B-003	1339	361aa	ENSP00000458445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		I3L0Z0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000572030.1	KDM6B-006	432	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000571047.1	KDM6B-004	362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000575521.1	KDM6B-005	219	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 22, Coding exons: 19, Transcript length: 6,713 bps, Translation length: 1,682 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O15054

CCDS

This transcript is a member of the Human CCDS set: CCDS32552

Version

ENST00000254846.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000440247 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.