Transcript: ENST00000394089.2 RARA-002

Description

retinoic acid receptor, alpha [Source:HGNC Symbol;Acc:9864]

Gene Synonyms

NR1B1, RAR

Location

Chromosome 17: 38,474,533-38,512,583 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 34 domains and features, is associated with 17760 variant alleles and maps to 386 oligo probes.

Gene

This transcript is a product of gene ENSG00000131759.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000254066.5	RARA-001	2414	462aa	ENSP00000254066.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11366	J3KSJ4 J3QRM2 P10276 Q6I9R7	NM_000964.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394081.3	RARA-004	2285	457aa	ENSP00000377643.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42317	F1D8N9 J3KSJ4 P10276	NM_001024809.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000425707.3	RARA-007	2240	365aa	ENSP00000389993.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45671	P10276	NM_001145302.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394089.2	RARA-002	2024	462aa	ENSP00000377649.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11366	J3KSJ4 J3QRM2 P10276 Q6I9R7	NM_001145301.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394086.3	RARA-003	2008	478aa	ENSP00000377648.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A8MUP8 J3KSJ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000475125.1	RARA-005	813	186aa	ENSP00000462514.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KSJ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577646.1	RARA-008	733	66aa	ENSP00000464287.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QRM2	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420042.1	RARA-006	1052	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000582914.1	RARA-009	581	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000579727.1	RARA-010	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,024 bps, Translation length: 462 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10276

CCDS

This transcript is a member of the Human CCDS set: CCDS11366

Version

ENST00000394089.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000257137 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394089.2 RARA-002

Summary