Transcript: ENST00000389547.3 PPFIA1-002

Description

protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 [Source:HGNC Symbol;Acc:9245]

Gene Synonyms

LIP.1, LIP1, LIPRIN

Location

Chromosome 11: 70,116,823-70,224,686 forward strand.

About this transcript

This transcript has 26 exons, is annotated with 32 domains and features, is associated with 48468 variant alleles and maps to 844 oligo probes.

Gene

This transcript is a product of gene ENSG00000131626.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000253925.7	PPFIA1-001	5234	1202aa	ENSP00000253925.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31627	B3KVS8 E9PID5 E9PPF6 Q13136	NM_003626.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389547.3	PPFIA1-002	4133	1185aa	ENSP00000374198.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31628	E9PID5 E9PPF6 Q13136	NM_177423.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528750.1	PPFIA1-018	1168	389aa	ENSP00000434445.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000528853.1	PPFIA1-023	745	98aa	ENSP00000434692.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530798.1	PPFIA1-013	710	237aa	ENSP00000433114.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000530746.1	PPFIA1-008	575	158aa	ENSP00000432722.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PID5 E9PPF6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532024.1	PPFIA1-009	563	99aa	ENSP00000432065.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PID5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000532504.1	PPFIA1-003	5159	583aa	ENSP00000433619.1	Nonsense mediated decay		E9PID5 E9PJZ7 E9PPF6	-	-
ENST00000526262.1	PPFIA1-004	4537	387aa	ENSP00000435752.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530294.1	PPFIA1-017	977	55aa	ENSP00000431828.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530390.1	PPFIA1-021	879	46aa	ENSP00000435978.1	Nonsense mediated decay		H0YEK0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000526347.1	PPFIA1-016	862	61aa	ENSP00000431692.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000526369.1	PPFIA1-014	564	97aa	ENSP00000437024.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000533894.1	PPFIA1-019	553	33aa	ENSP00000432913.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000525922.1	PPFIA1-025	358	48aa	ENSP00000436234.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000530548.1	PPFIA1-006	3774	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000532443.1	PPFIA1-012	587	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000526074.1	PPFIA1-020	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528284.1	PPFIA1-015	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000530932.1	PPFIA1-010	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000531657.1	PPFIA1-007	3036	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000527612.1	PPFIA1-022	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000532793.1	PPFIA1-024	550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000525530.1	PPFIA1-011	514	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 25, Transcript length: 4,133 bps, Translation length: 1,185 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13136

CCDS

This transcript is a member of the Human CCDS set: CCDS31628

Version

ENST00000389547.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000393906 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000389547.3 PPFIA1-002

Summary