Transcript: ENST00000585325.1 PRKCSH-012

Description

protein kinase C substrate 80K-H [Source:HGNC Symbol;Acc:9411]

Gene Synonyms

AGE-R2, G19P1, PCLD, PKCSH, PLD1

Location

Chromosome 19: 11,557,131-11,558,833 forward strand.

About this transcript

This transcript has 4 exons, is associated with 1186 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSG00000130175.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000252455.2	PRKCSH-201	2262	528aa	ENSP00000252455.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32911	K7EIP3 K7EJ70 K7EKX1 K7EPW7 P14314	NM_002743.2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000412601.1	PRKCSH-202	2253	525aa	ENSP00000395616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45977	K7EIP3 K7EJ70 K7EKX1 K7EPW7 P14314	NM_001001329.1	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591462.1	PRKCSH-002	2209	525aa	ENSP00000465489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45977	K7EIP3 K7EJ70 K7EKX1 K7EPW7 P14314	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000587327.1	PRKCSH-005	2189	525aa	ENSP00000466012.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45977	K7EIP3 K7EJ70 K7EKX1 K7EPW7 P14314	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000592741.1	PRKCSH-003	2100	535aa	ENSP00000466134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIP3 K7EJ70 K7EKX1 K7ELL7 K7EPW7	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000589838.1	PRKCSH-001	1898	528aa	ENSP00000465461.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32911	K7EIP3 K7EJ70 K7EKX1 K7EPW7 P14314	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000589126.1	PRKCSH-016	625	168aa	ENSP00000467566.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIP3 K7EJ70 K7EKX1 K7EPW7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000593101.1	PRKCSH-018	578	144aa	ENSP00000465047.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIP3 K7EJ70 K7EKX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000591946.1	PRKCSH-010	569	62aa	ENSP00000464835.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIP3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000588269.1	PRKCSH-007	557	132aa	ENSP00000465889.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EL27	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000587509.1	PRKCSH-017	545	140aa	ENSP00000465821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EIP3 K7EKX1	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000586486.1	PRKCSH-006	1613	200aa	ENSP00000465948.1	Nonsense mediated decay		P14314	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000591510.1	PRKCSH-021	591	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593053.1	PRKCSH-009	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000593104.1	PRKCSH-008	545	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000590098.1	PRKCSH-014	795	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000587290.1	PRKCSH-013	780	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585325.1	PRKCSH-012	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592445.1	PRKCSH-011	598	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589990.1	PRKCSH-019	567	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000585540.1	PRKCSH-020	501	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000592435.1	PRKCSH-015	358	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 598 bps,

Version

ENST00000585325.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000458819 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000585325.1 PRKCSH-012

Summary