Transcript: ENST00000558357.1 INO80-002

Description

INO80 complex subunit [Source:HGNC Symbol;Acc:26956]

Gene Synonyms

INO80A, INOC1, Ino80, KIAA1259, hINO80

Location

Chromosome 15: 41,271,664-41,408,330 reverse strand.

About this transcript

This transcript has 35 exons, is annotated with 18 domains and features, is associated with 64876 variant alleles and maps to 983 oligo probes.

Gene

This transcript is a product of gene ENSG00000128908.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000361937.3	INO80-001	6439	1556aa	ENSP00000355205.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10071	Q9NUK2 Q9ULG1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401393.3	INO80-201	5989	1556aa	ENSP00000384686.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10071	Q9NUK2 Q9ULG1	NM_017553.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000558357.1	INO80-002	5503	1104aa	ENSP00000453677.1	Nonsense mediated decay		H0YMN5	-	-
ENST00000557849.1	INO80-006	599	27aa	ENSP00000452806.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000559995.1	INO80-005	566	79aa	ENSP00000454057.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000561244.1	INO80-007	493	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000558270.1	INO80-010	888	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560689.1	INO80-009	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000560799.1	INO80-008	542	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000561172.1	INO80-004	402	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 35, Coding exons: 26, Transcript length: 5,503 bps, Translation length: 1,104 residues

Version

ENST00000558357.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000418863 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000558357.1 INO80-002

Summary