Transcript: ENST00000567869.1 HERC2-004

Description

HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:4868]

Gene Synonyms

D15F37S1, MRT38, SHEP1, jdf2, p528

Location

Chromosome 15: 28,435,347-28,449,082 reverse strand.

About this transcript

This transcript has 10 exons, is associated with 6161 variant alleles and maps to 521 oligo probes.

Gene

This transcript is a product of gene ENSG00000128731.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261609.7	HERC2-001	15337	4834aa	ENSP00000261609.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10021	O95714	NM_004667.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569772.1	HERC2-011	598	200aa	ENSP00000457745.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000564734.1	HERC2-003	3121	80aa	ENSP00000456237.1	Nonsense mediated decay		H3BRG9	-	-
ENST00000563945.1	HERC2-002	491	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000567869.1	HERC2-004	3523	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000566635.1	HERC2-006	2114	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000568206.1	HERC2-005	2018	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000562136.1	HERC2-008	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563670.1	HERC2-007	618	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569335.1	HERC2-010	582	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564383.1	HERC2-009	471	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000564519.1	HERC2-012	323	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 0, Transcript length: 3,523 bps,

Version

ENST00000567869.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000420119 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000567869.1 HERC2-004

Summary