Transcript: ENST00000249373.3 SMO-001

Description

smoothened, frizzled family receptor [Source:HGNC Symbol;Acc:11119]

Gene Synonyms

FZD11, Gx, SMOH

Location

About this transcript

This transcript has 12 exons, is annotated with 29 domains and features, is associated with 17847 variant alleles and maps to 532 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000249373.3	SMO-001	3738	787aa	ENSP00000249373.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS5811	A4D1K5 Q99835	NM_005631.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000462420.1	SMO-003	789	151aa	ENSP00000418720.1	Nonsense mediated decay		H7C509	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000475779.1	SMO-004	582	70aa	ENSP00000420749.1	Nonsense mediated decay		H7C5S9	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000495998.1	SMO-002	732	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,738 bps, Translation length: 787 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99835

CCDS

This transcript is a member of the Human CCDS set: CCDS5811

Version

ENST00000249373.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000350986 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.