Transcript: ENST00000322985.9 PODXL-001

Description

podocalyxin-like [Source:HGNC Symbol;Acc:9171]

Gene Synonyms

Gp200, PC, PCLP, PCLP-1, PCLP1

Location

Chromosome 7: 131,188,890-131,241,368 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 10 domains and features, is associated with 23561 variant alleles and maps to 284 oligo probes.

Gene

This transcript is a product of gene ENSG00000128567.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000541194.1	PODXL-202	5988	560aa	ENSP00000440518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GWY5	NM_001018111.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537928.1	PODXL-201	5886	526aa	ENSP00000442655.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H7A2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000378555.3	PODXL-005	2105	558aa	ENSP00000367817.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34755	O00592	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000322985.9	PODXL-001	2011	526aa	ENSP00000319782.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47714	O00592	NM_005397.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000446198.1	PODXL-003	6170	324aa	ENSP00000390152.1	Nonsense mediated decay		G3V0E6	-	-
ENST00000465001.1	PODXL-010	530	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487965.1	PODXL-007	809	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484346.1	PODXL-009	797	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000482581.1	PODXL-006	588	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000490761.1	PODXL-008	571	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 2,011 bps, Translation length: 526 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O00592

CCDS

This transcript is a member of the Human CCDS set: CCDS47714

Version

ENST00000322985.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000337626 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000322985.9 PODXL-001

Summary