Transcript: ENST00000466045.1 CDHR3-005

Description

cadherin-related family member 3 [Source:HGNC Symbol;Acc:26308]

Gene Synonyms

CDH28, FLJ23834, FLJ44366

Location

Chromosome 7: 105,641,921-105,674,219 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 16 domains and features, is associated with 14268 variant alleles and maps to 413 oligo probes.

Gene

This transcript is a product of gene ENSG00000128536.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000542731.1	CDHR3-203	6500	885aa	ENSP00000439766.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H0Z2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000343407.5	CDHR3-201	5856	279aa	ENSP00000341510.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNJ3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000317716.9	CDHR3-004	3813	885aa	ENSP00000325954.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47684	E7EQG5 Q6ZTQ4	NM_152750.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478080.1	CDHR3-006	2633	797aa	ENSP00000417771.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E7EQG5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466045.1	CDHR3-005	2358	318aa	ENSP00000419017.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C555	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000541203.1	CDHR3-202	971	149aa	ENSP00000443733.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PEI5 F8WF00	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000468477.1	CDHR3-011	482	161aa	ENSP00000418958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000496633.1	CDHR3-007	949	149aa	ENSP00000417198.1	Nonsense mediated decay		E9PEI5 F8WF00	-	-
ENST00000488386.1	CDHR3-009	540	61aa	ENSP00000419593.1	Nonsense mediated decay		F8WF00	-	-
ENST00000470188.1	CDHR3-002	2199	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000474330.1	CDHR3-001	1603	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472116.1	CDHR3-003	993	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000487084.1	CDHR3-008	834	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000461766.1	CDHR3-010	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468143.1	CDHR3-012	575	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000471910.1	CDHR3-013	392	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000466351.1	CDHR3-014	362	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,358 bps, Translation length: 318 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000466045.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000349026 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000466045.1 CDHR3-005

Summary