Transcript: ENST00000394121.4 THRA-003

Description

thyroid hormone receptor, alpha [Source:HGNC Symbol;Acc:11796]

Gene Synonyms

AR7, CHNG6, EAR-7.1/EAR-7.2, EAR7, ERB-T-1, ERBA, ERBA1, NR1A1, THRA1, THRA2, THRA3, c-ERBA-1

Location

Chromosome 17: 38,218,446-38,249,866 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 31 domains and features, is associated with 15083 variant alleles and maps to 643 oligo probes.

Gene

This transcript is a product of gene ENSG00000126351.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000450525.2	THRA-002	4895	410aa	ENSP00000395641.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42316	J3KTF3 J3QR26 J3QRA9 J3QRW5 P10827 Q6FH41 Q6LDR0	NM_199334.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264637.4	THRA-001	2538	490aa	ENSP00000264637.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11360	J3KTF3 J3QR26 J3QRA9 J3QRW5 P10827	NM_003250.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000584985.1	THRA-005	2421	451aa	ENSP00000463466.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58546	J3KTF3 J3QR26 J3QRA9 J3QRW5 P10827	NM_001190918.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394121.4	THRA-003	2260	490aa	ENSP00000377679.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11360	J3KTF3 J3QR26 J3QRA9 J3QRW5 P10827	NM_001190919.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000546243.1	THRA-006	1909	410aa	ENSP00000443972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS42316	J3KTF3 J3QR26 J3QRA9 J3QRW5 P10827 Q6FH41 Q6LDR0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000578218.1	THRA-009	907	84aa	ENSP00000464123.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTF3 J3QR26 J3QRA9 J3QRW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577288.1	THRA-007	581	31aa	ENSP00000464013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR26	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000585047.1	THRA-008	574	72aa	ENSP00000462955.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3KTF3 J3QR26 J3QRW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577486.1	THRA-010	563	57aa	ENSP00000464414.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		J3QR26 J3QRW5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000577637.1	THRA-011	677	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,260 bps, Translation length: 490 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P10827

CCDS

This transcript is a member of the Human CCDS set: CCDS11360

Version

ENST00000394121.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000447397 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000394121.4 THRA-003

Summary