Transcript: ENST00000441024.2 CNOT1-002

Description

CCR4-NOT transcription complex, subunit 1 [Source:HGNC Symbol;Acc:7877]

Gene Synonyms

AD-005, CDC39, KIAA1007, NOT1, NOT1H

Location

Chromosome 16: 58,577,231-58,663,742 reverse strand.

About this transcript

This transcript has 31 exons, is annotated with 12 domains and features, is associated with 41132 variant alleles and maps to 713 oligo probes.

Gene

This transcript is a product of gene ENSG00000125107.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000317147.5	CNOT1-001	8471	2376aa	ENSP00000320949.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS10799	A5YKK6 B3KS60 B7Z6X2 H3BPF1 H3BT18 H3BUY8	NM_016284.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000569240.1	CNOT1-003	7660	2371aa	ENSP00000455635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58468	A5YKK6 B3KS60 B7Z6X2 H3BPF1 H3BT18 H3BUY8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000441024.2	CNOT1-002	4999	1551aa	ENSP00000413113.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45501	A5YKK6 H3BPF1 H3BT18 H3BUY8	NM_206999.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000245138.4	CNOT1-201	4098	1227aa	ENSP00000245138.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KS60 B5MDN3 B7Z6X2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000568917.1	CNOT1-019	1317	439aa	ENSP00000454611.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMZ2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000569882.1	CNOT1-023	831	277aa	ENSP00000454377.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BMH0	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567285.1	CNOT1-016	722	241aa	ENSP00000458057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000564557.1	CNOT1-010	582	62aa	ENSP00000456975.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPF1 H3BT18 H3BUY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000562046.1	CNOT1-022	578	193aa	ENSP00000456131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000567133.1	CNOT1-017	553	185aa	ENSP00000454763.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000569020.1	CNOT1-008	535	25aa	ENSP00000457869.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BUY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000565697.1	CNOT1-007	385	25aa	ENSP00000455289.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H3BPF1 H3BUY8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000567188.1	CNOT1-005	7830	2150aa	ENSP00000456649.1	Nonsense mediated decay		A5YKK6 H3BPF1 H3BT18 H3BUY8	-	-
ENST00000565605.1	CNOT1-020	739	96aa	ENSP00000457460.1	Nonsense mediated decay		H3BPF1 H3BT18 H3BU44 H3BUY8	-	-
ENST00000566240.1	CNOT1-018	567	68aa	ENSP00000457173.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000569732.1	CNOT1-015	906	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000568158.1	CNOT1-009	496	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000569263.1	CNOT1-006	304	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000563130.1	CNOT1-004	2280	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569916.1	CNOT1-011	599	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000563283.1	CNOT1-012	551	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000569924.1	CNOT1-014	493	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000570139.1	CNOT1-013	458	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 31, Coding exons: 30, Transcript length: 4,999 bps, Translation length: 1,551 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A5YKK6

CCDS

This transcript is a member of the Human CCDS set: CCDS45501

Version

ENST00000441024.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000422242 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000441024.2 CNOT1-002

Summary