Transcript: ENST00000244769.4 ATXN1-001

Description

ataxin 1 [Source:HGNC Symbol;Acc:10548]

Gene Synonyms

ATX1, D6S504E, SCA1

Location

Chromosome 6: 16,299,343-16,761,687 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 14 domains and features, is associated with 196434 variant alleles and maps to 674 oligo probes.

Gene

This transcript is a product of gene ENSG00000124788.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000244769.4	ATXN1-001	10602	815aa	ENSP00000244769.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34342	P54253	NM_000332.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000436367.1	ATXN1-201	10587	815aa	ENSP00000416360.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34342	P54253	NM_001128164.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000467008.1	ATXN1-004	3362	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498374.1	ATXN1-005	1648	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000473388.2	ATXN1-008	1569	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483591.2	ATXN1-002	892	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000495178.1	ATXN1-007	853	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000483954.1	ATXN1-009	744	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000492857.1	ATXN1-003	647	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000479680.1	ATXN1-006	568	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 2, Transcript length: 10,602 bps, Translation length: 815 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P54253

CCDS

This transcript is a member of the Human CCDS set: CCDS34342

Version

ENST00000244769.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000039943 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000244769.4 ATXN1-001

Summary