Transcript: ENST00000319533.5 RPP40-002

Description

ribonuclease P/MRP 40kDa subunit [Source:HGNC Symbol;Acc:20992]

Gene Synonyms

RNASEP1, bA428J1.3

Location

About this transcript

This transcript has 7 exons, is annotated with 3 domains and features, is associated with 4339 variant alleles and maps to 290 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000380051.2	RPP40-001	1483	363aa	ENSP00000369391.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34333	O75818	NM_006638.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000319533.5	RPP40-002	1088	340aa	ENSP00000317998.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69040	O75818	NM_001286132.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000464646.1	RPP40-006	1042	303aa	ENSP00000419431.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000479782.1	RPP40-005	500	113aa	ENSP00000418874.1	Nonsense mediated decay		F8WC38	-	-
ENST00000483546.1	RPP40-003	654	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000468105.1	RPP40-004	632	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 7, Transcript length: 1,088 bps, Translation length: 340 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O75818

CCDS

This transcript is a member of the Human CCDS set: CCDS69040

Version

ENST00000319533.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000039734 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.