Transcript: ENST00000244709.4 TREM1-001

Description

triggering receptor expressed on myeloid cells 1 [Source:HGNC Symbol;Acc:17760]

Gene Synonyms

CD354, TREM-1

Location

Chromosome 6: 41,242,942-41,254,457 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 5167 variant alleles and maps to 315 oligo probes.

Gene

This transcript is a product of gene ENSG00000124731.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000591620.1	TREM1-003	2048	225aa	ENSP00000465345.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS59499	K7EJW1	NM_001242589.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000244709.4	TREM1-001	1690	234aa	ENSP00000244709.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4854	Q38L15 Q9NP99	NM_018643.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334475.6	TREM1-002	1043	150aa	ENSP00000334284.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS56427	Q9NP99	NM_001242590.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589614.1	TREM1-007	772	250aa	ENSP00000465688.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		K7EKM5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000589882.1	TREM1-004	1876	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000586287.1	TREM1-005	574	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000589695.1	TREM1-006	519	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,690 bps, Translation length: 234 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9NP99

CCDS

This transcript is a member of the Human CCDS set: CCDS4854

Version

ENST00000244709.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000040505 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

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Recent locations

Transcript: ENST00000244709.4 TREM1-001

Summary