Transcript: ENST00000371877.3 STIL-004

Description

SCL/TAL1 interrupting locus [Source:HGNC Symbol;Acc:10879]

Gene Synonyms

MCPH7, SIL

Location

Chromosome 1: 47,715,814-47,779,812 reverse strand.

About this transcript

This transcript has 17 exons, is annotated with 7 domains and features, is associated with 28599 variant alleles and maps to 639 oligo probes.

Gene

This transcript is a product of gene ENSG00000123473.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000360380.3	STIL-001	5225	1287aa	ENSP00000353544.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS548	Q15468 Q5T0D0	NM_001282936.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000337817.5	STIL-202	5016	1287aa	ENSP00000337367.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS548	Q15468 Q5T0D0	NM_003035.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371877.3	STIL-004	5009	1288aa	ENSP00000360944.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41329	Q15468	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000243182.6	STIL-201	4609	1287aa	ENSP00000243182.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS548	Q15468 Q5T0D0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000396221.2	STIL-008	4558	1270aa	ENSP00000379523.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PSF2	NM_001282937.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000447475.2	STIL-002	2984	918aa	ENSP00000411664.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T0C7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000436811.1	STIL-006	633	211aa	ENSP00000409087.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T0D4	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000413565.1	STIL-005	542	92aa	ENSP00000412019.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5T0C8	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000418131.1	STIL-003	3417	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000433827.2	STIL-007	541	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 17, Coding exons: 16, Transcript length: 5,009 bps, Translation length: 1,288 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q15468

CCDS

This transcript is a member of the Human CCDS set: CCDS41329

Version

ENST00000371877.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000021652 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000371877.3 STIL-004

Summary