Transcript: ENST00000448243.1 CCDC18-006

Description

coiled-coil domain containing 18 [Source:HGNC Symbol;Acc:30370]

Gene Synonyms

NY-SAR-41, dJ717I23.1

Location

Chromosome 1: 93,646,273-93,651,955 forward strand.

About this transcript

This transcript has 4 exons, is annotated with 3 domains and features, is associated with 1537 variant alleles and maps to 123 oligo probes.

Gene

This transcript is a product of gene ENSG00000122483.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	RefSeq	Flags
ENST00000343253.7	CCDC18-008	4867	1454aa	ENSP00000343377.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5T9S5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000370276.1	CCDC18-001	4779	1508aa	ENSP00000359299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000557479.1	CCDC18-203	4658	1417aa	ENSP00000451099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PFB9 G3V388	NM_206886 NP_996769	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000334652.5	CCDC18-201	4650	283aa	ENSP00000334084.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5H8K2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000401026.3	CCDC18-003	4552	1299aa	ENSP00000383808.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PFB9	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000338949.4	CCDC18-202	4526	803aa	ENSP00000344380.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9PDA0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000455267.1	CCDC18-004	2161	720aa	ENSP00000391151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5T9S2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000448243.1	CCDC18-006	496	166aa	ENSP00000394234.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000481180.1	CCDC18-002	1751	443aa	ENSP00000431409.1	Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000479653.1	CCDC18-007	541	95aa	ENSP00000434031.1	Nonsense mediated decay	H0YDP2	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000421014.2	CCDC18-010	606	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000528942.1	CCDC18-009	542	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-	-
ENST00000447456.1	CCDC18-005	687	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 496 bps, Translation length: 166 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENST00000448243.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000029246 (version 2)

Favourite species

All species

Recent locations

Transcript: ENST00000448243.1 CCDC18-006

Summary

Transcript-based displays