Transcript: ENST00000512643.1 PDS5A-007

Description

PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:29088]

Gene Synonyms

KIAA0648, PDS5, PIG54, SCC-112, SCC112

Location

Chromosome 4: 39,902,075-39,915,346 reverse strand.

About this transcript

This transcript has 5 exons, is annotated with 2 domains and features, is associated with 6023 variant alleles and maps to 126 oligo probes.

Gene

This transcript is a product of gene ENSG00000121892.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000303538.8	PDS5A-001	7176	1337aa	ENSP00000303427.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47045	B3KMN2 G1UI16 Q29RF7 Q96DB6	NM_001100399.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503396.1	PDS5A-003	2685	600aa	ENSP00000426749.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54759	Q29RF7	NM_001100400.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000513798.1	PDS5A-006	494	165aa	ENSP00000424531.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000507020.1	PDS5A-009	781	126aa	ENSP00000424510.1	Nonsense mediated decay		H0Y9L6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000512643.1	PDS5A-007	581	43aa	ENSP00000425386.1	Nonsense mediated decay		H0Y9X6	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000507766.1	PDS5A-004	4196	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503867.1	PDS5A-008	640	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000506262.1	PDS5A-005	559	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000503696.1	PDS5A-011	465	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000508625.1	PDS5A-010	351	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 581 bps, Translation length: 43 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000512643.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000361293 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000512643.1 PDS5A-007

Summary