Transcript: ENST00000241261.2 TNFSF10-001

Description

tumor necrosis factor (ligand) superfamily, member 10 [Source:HGNC Symbol;Acc:11925]

Gene Synonyms

APO2L, Apo-2L, CD253, TL2, TRAIL

Location

About this transcript

This transcript has 5 exons, is annotated with 10 domains and features, is associated with 7939 variant alleles and maps to 534 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000241261.2	TNFSF10-001	1953	281aa	ENSP00000241261.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3219	P50591 Q6IBA9	NM_003810.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000420541.2	TNFSF10-002	1619	101aa	ENSP00000389931.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54680	P50591 Q6JSD9	NM_001190942.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000430881.1	TNFSF10-007	467	74aa	ENSP00000404008.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000466777.1	TNFSF10-004	1326	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000494851.1	TNFSF10-006	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000472804.1	TNFSF10-005	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 1,953 bps, Translation length: 281 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P50591

CCDS

This transcript is a member of the Human CCDS set: CCDS3219

Version

ENST00000241261.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000346601 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.