Transcript: ENST00000336294.5 TMEM39B-001

Description

transmembrane protein 39B [Source:HGNC Symbol;Acc:25510]

Gene Synonyms

FLJ10315

Location

Chromosome 1: 32,538,503-32,568,462 forward strand.

About this transcript

This transcript has 9 exons, is annotated with 13 domains and features, is associated with 14473 variant alleles and maps to 377 oligo probes.

Gene

This transcript is a product of gene ENSG00000121775.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000427288.1	TMEM39B-202	2012	342aa	ENSP00000391719.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DTN8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000336294.5	TMEM39B-001	1813	492aa	ENSP00000338165.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS351	B4DQE6 Q9BT39 Q9GZU3 Q9NW51	NM_018056.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000373634.4	TMEM39B-201	1490	293aa	ENSP00000362737.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DQE6 Q9BT39	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456834.2	TMEM39B-203	1156	221aa	ENSP00000390057.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4DKN8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000438825.1	TMEM39B-009	690	192aa	ENSP00000414616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q5VVU5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000441402.1	TMEM39B-003	1538	193aa	ENSP00000390889.1	Nonsense mediated decay		F8WB89	-	-
ENST00000487305.1	TMEM39B-002	2087	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000476968.1	TMEM39B-008	1994	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000468135.1	TMEM39B-004	1834	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472503.1	TMEM39B-006	950	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000498613.1	TMEM39B-007	854	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000466321.1	TMEM39B-005	770	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 1,813 bps, Translation length: 492 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9GZU3

CCDS

This transcript is a member of the Human CCDS set: CCDS351

Version

ENST00000336294.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011489 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

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Recent locations

Transcript: ENST00000336294.5 TMEM39B-001

Summary