Transcript: ENST00000542766.1 IFT43-001

Description

intraflagellar transport 43 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:29669]

Gene Synonyms

C14orf179, CED3, FLJ32173, MGC16028

Location

Chromosome 14: 76,452,113-76,550,416 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 2 domains and features, is associated with 40733 variant alleles and maps to 394 oligo probes.

Gene

This transcript is a product of gene ENSG00000119650.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000556742.1	IFT43-005	848	113aa	ENSP00000451096.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS58330	Q96FT9	NM_001255995.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000314067.6	IFT43-201	833	208aa	ENSP00000324177.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41973	Q96FT9	NM_001102564.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000238628.6	IFT43-004	816	213aa	ENSP00000238628.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS9847	Q96FT9	NM_052873.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542766.1	IFT43-001	1014	208aa	ENSP00000440064.1	Nonsense mediated decay	CCDS41973	Q96FT9	-	-
ENST00000555370.1	IFT43-007	460	32aa	ENSP00000452051.1	Nonsense mediated decay		G3V4X2	-	-
ENST00000553338.1	IFT43-008	684	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000553438.1	IFT43-009	472	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000555305.1	IFT43-003	1765	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554026.1	IFT43-002	1102	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554233.1	IFT43-012	635	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000554423.1	IFT43-011	526	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000555677.1	IFT43-006	487	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 1,014 bps, Translation length: 208 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q96FT9

CCDS

This transcript is a member of the Human CCDS set: CCDS41973

Version

ENST00000542766.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000414470 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000542766.1 IFT43-001

Summary