Transcript: ENST00000542837.1 SLC8A2-003

Description

solute carrier family 8 (sodium/calcium exchanger), member 2 [Source:HGNC Symbol;Acc:11069]

Gene Synonyms

KIAA1087, NCX2

Location

Chromosome 19: 47,933,076-47,975,129 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 25 domains and features, is associated with 19396 variant alleles and maps to 263 oligo probes.

Gene

This transcript is a product of gene ENSG00000118160.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000236877.6	SLC8A2-001	5234	921aa	ENSP00000236877.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33065	F5GYS4 F5H6L7 M0R1Z4 M0R211 Q9UPR5	NM_015063.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542837.1	SLC8A2-003	2445	677aa	ENSP00000437536.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYS4 F5H6L7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000539381.1	SLC8A2-004	1606	384aa	ENSP00000440588.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GYS4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000594353.1	SLC8A2-006	581	159aa	ENSP00000472233.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R211	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000597014.1	SLC8A2-005	570	145aa	ENSP00000472208.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		M0R1Z4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000601757.1	SLC8A2-007	575	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000600576.1	SLC8A2-008	633	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 8, Transcript length: 2,445 bps, Translation length: 677 residues

Version

ENST00000542837.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000467000 (version 1)

Annotation Attributes

dotter confirmed [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000542837.1 SLC8A2-003

Summary