Transcript: ENST00000324856.7 ARID1A-001

Description

AT rich interactive domain 1A (SWI-like) [Source:HGNC Symbol;Acc:11110]

Gene Synonyms

B120, BAF250, BAF250A, BAF250a, BM029, C10rf4, C1orf4, ELD, MRD14, OSA1, P270, SMARCF1, hELD, hOSA1

Location

Chromosome 1: 27,022,524-27,108,595 forward strand.

About this transcript

This transcript has 20 exons, is annotated with 42 domains and features, is associated with 58764 variant alleles and maps to 1017 oligo probes.

Gene

This transcript is a product of gene ENSG00000117713.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000324856.7	ARID1A-001	8577	2285aa	ENSP00000320485.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS285	A4FU79 C1KEN7 E9PQW6 O14497 Q96SM7 Q96SY8 Q96T01	NM_006015.4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000457599.2	ARID1A-002	6268	2068aa	ENSP00000387636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44091	A4FU79 E9PQW6 O14497 Q96SM7 Q96SY8 Q96T01	NM_139135.2	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000374152.2	ARID1A-003	5992	1902aa	ENSP00000363267.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4FU79 C1KEN7 E9PQW6 O14497 Q96SM7 Q96SY8 Q96T01	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000430799.2	ARID1A-009	3978	1182aa	ENSP00000390317.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4FU79 C1KEN7 Q96SM7 Q96SY8 Q96T01	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540690.1	ARID1A-201	2678	613aa	ENSP00000442437.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A4FU79 Q96SM7 Q96SY8 Q96T01	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000524572.1	ARID1A-007	546	122aa	ENSP00000432473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E9PQW6	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000466382.1	ARID1A-004	2696	144aa	ENSP00000432368.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000532781.1	ARID1A-006	2583	188aa	ENSP00000436692.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430291.1	ARID1A-005	509	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 20, Coding exons: 20, Transcript length: 8,577 bps, Translation length: 2,285 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14497

CCDS

This transcript is a member of the Human CCDS set: CCDS285

Version

ENST00000324856.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000011437 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000324856.7 ARID1A-001

Summary