Transcript: ENST00000367021.3 IRF6-001

Description

interferon regulatory factor 6 [Source:HGNC Symbol;Acc:6121]

Gene Synonyms

LPS, OFC6, PIT, PPS, PPS1, VWS, VWS1

Location

About this transcript

This transcript has 9 exons, is annotated with 16 domains and features, is associated with 8633 variant alleles and maps to 666 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367021.3	IRF6-001	4306	467aa	ENSP00000355988.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1492	B1AJU4 G0Z349 O14896	NM_006147.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000542854.1	IRF6-201	1472	372aa	ENSP00000440532.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55681	O14896	NM_001206696.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000456314.1	IRF6-002	1027	276aa	ENSP00000403855.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B1AJU4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464698.1	IRF6-003	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 7, Transcript length: 4,306 bps, Translation length: 467 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: O14896

CCDS

This transcript is a member of the Human CCDS set: CCDS1492

Version

ENST00000367021.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000088827 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.