Transcript: ENST00000235790.4 KDM5B-002

Description

lysine (K)-specific demethylase 5B [Source:HGNC Symbol;Acc:18039]

Gene Synonyms

CT31, JARID1B, PLU-1, PLU1, PUT1, RBBP2H1, RBBP2H1A

Location

Chromosome 1: 202,699,033-202,776,427 reverse strand.

About this transcript

This transcript has 26 exons, is annotated with 26 domains and features, is associated with 35740 variant alleles and maps to 593 oligo probes.

Gene

This transcript is a product of gene ENSG00000117139.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000367265.3	KDM5B-001	7438	1544aa	ENSP00000356234.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30974	B3KMS2 B3KMS8 B3KV94 Q6UGB8 Q9NSZ7 Q9UFC7 Q9UFD3 Q9UGL1 Q9UIW7	NM_006618.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000367264.2	KDM5B-003	6449	1580aa	ENSP00000356233.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KMS2 B3KMS8 Q6UGB8 Q9NSZ7 Q9UFC7 Q9UGL1 Q9UIW7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000235790.4	KDM5B-002	4418	1275aa	ENSP00000235790.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3KMS8 B3KV94	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000602511.1	KDM5B-010	542	77aa	ENSP00000473481.1	Nonsense mediated decay		R4GN45	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000456180.1	KDM5B-007	558	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000470573.1	KDM5B-006	535	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000467487.3	KDM5B-004	529	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000472822.1	KDM5B-005	1648	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000491153.1	KDM5B-009	596	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000498276.1	KDM5B-008	560	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 26, Coding exons: 23, Transcript length: 4,418 bps, Translation length: 1,275 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000235790.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000099185 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000235790.4 KDM5B-002

Summary