Transcript: ENST00000435345.2 SCP2-015

Description

sterol carrier protein 2 [Source:HGNC Symbol;Acc:10606]

Gene Synonyms

NLTP, NSL-TP, SCP-2, SCP-CHI, SCP-X, SCPX

Location

Chromosome 1: 53,480,640-53,516,785 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 6 domains and features, is associated with 14014 variant alleles and maps to 400 oligo probes.

Gene

This transcript is a product of gene ENSG00000116171.12 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000488965.1	SCP2-002	3926	59aa	ENSP00000435783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30719	P22307	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371514.3	SCP2-001	2811	547aa	ENSP00000360569.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS572	P22307	NM_002979.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000407246.2	SCP2-011	2239	523aa	ENSP00000384569.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53318	P22307	NM_001193599.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371513.5	SCP2-004	2003	322aa	ENSP00000360568.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS41338	P22307	NM_001007098.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000528311.1	SCP2-010	1896	466aa	ENSP00000434132.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53319	P22307	NM_001193617.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000371509.4	SCP2-007	1889	503aa	ENSP00000360564.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS53317	P22307	NM_001193600.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000408941.3	SCP2-201	1298	59aa	ENSP00000386214.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS30719	P22307	NM_001007250.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000478274.2	SCP2-006	969	140aa	ENSP00000437317.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B4E0J3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000430330.2	SCP2-008	938	140aa	ENSP00000406636.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44150	P22307	NM_001007100.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000435345.2	SCP2-015	894	143aa	ENSP00000396413.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS44149	P22307	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000529363.2	SCP2-013	720	240aa	ENSP00000431279.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000484100.1	SCP2-005	671	78aa	ENSP00000432645.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000478631.2	SCP2-009	5204	366aa	ENSP00000435194.1	Nonsense mediated decay		E9PLD1 Q59HG9	-	-
ENST00000533119.1	SCP2-014	742	32aa	ENSP00000436581.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000473584.1	SCP2-003	582	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000528809.1	SCP2-012	570	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 894 bps, Translation length: 143 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P22307

CCDS

This transcript is a member of the Human CCDS set: CCDS44149

Version

ENST00000435345.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000392268 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000435345.2 SCP2-015

Summary