Transcript: ENST00000538136.1 MSH6-201

Description

mutS homolog 6 [Source:HGNC Symbol;Acc:7329]

Gene Synonyms

GTBP, GTMBP, HNPCC5, HSAP, p160

Location

Chromosome 2: 48,011,094-48,034,084 forward strand.

About this transcript

This transcript has 10 exons, is annotated with 19 domains and features, is associated with 26151 variant alleles and maps to 562 oligo probes.

Gene

This transcript is a product of gene ENSG00000116062.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000234420.5	MSH6-001	7476	1360aa	ENSP00000234420.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1836	C9J7Y7 C9J8Y8 C9JH55 F5H2F9 P52701 U3KQ72	NM_000179.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000538136.1	MSH6-201	4055	1058aa	ENSP00000438580.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62907	F5H2F9	NM_001281494.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000540021.1	MSH6-202	3829	1230aa	ENSP00000446475.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS62906	B4DF41 F5H2F9	NM_001281493.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000606499.1	MSH6-008	833	51aa	ENSP00000475605.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQ72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000455383.1	MSH6-004	578	115aa	ENSP00000397484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J8Y8 C9JH55 U3KQ72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000411819.1	MSH6-006	548	151aa	ENSP00000406248.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J7Y7 C9J8Y8 C9JH55 U3KQ72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000420813.1	MSH6-005	491	101aa	ENSP00000390382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JH55 U3KQ72	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000445503.1	MSH6-002	4158	160aa	ENSP00000405294.1	Nonsense mediated decay		F8WAX8 U3KQ72	-	-
ENST00000456246.1	MSH6-003	846	104aa	ENSP00000410570.1	Nonsense mediated decay		F8W7G9	-	-
ENST00000607272.1	MSH6-009	2216	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000493177.1	MSH6-007	813	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000454137.1	MSH6-010	725	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 10, Coding exons: 7, Transcript length: 4,055 bps, Translation length: 1,058 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS62907

Version

ENST00000538136.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000538136.1 MSH6-201

Summary