Transcript: ENST00000356805.4 SPTBN1-001

Description

spectrin, beta, non-erythrocytic 1 [Source:HGNC Symbol;Acc:11275]

Gene Synonyms

ELF, HEL102, SPTB2, betaSpII

Location

About this transcript

This transcript has 36 exons, is annotated with 102 domains and features, is associated with 108981 variant alleles and maps to 1330 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000333896.5	SPTBN1-002	9075	2155aa	ENSP00000334156.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33199	Q01082 Q8WYB3	NM_178313.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000356805.4	SPTBN1-001	8482	2364aa	ENSP00000349259.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33198	B2ZZ89 D6W5C0 F8W6C1 Q01082 Q53RC4	NM_003128.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000389980.3	SPTBN1-003	2164	690aa	ENSP00000374630.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F8W6C1 Q53RC4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000467371.1	SPTBN1-005	3332	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000602898.1	SPTBN1-006	2942	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000496323.1	SPTBN1-004	2225	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 36, Coding exons: 35, Transcript length: 8,482 bps, Translation length: 2,364 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q01082

CCDS

This transcript is a member of the Human CCDS set: CCDS33198

Version

ENST00000356805.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000258115 (version 3)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.