Transcript: ENST00000415683.2 GTF3C2-010

Description

general transcription factor IIIC, polypeptide 2, beta 110kDa [Source:HGNC Symbol;Acc:4665]

Gene Synonyms

KIAA0011, TFIIIC-BETA, TFIIIC110

Location

Chromosome 2: 27,550,049-27,552,327 reverse strand.

About this transcript

This transcript has 6 exons, is annotated with 10 domains and features, is associated with 1183 variant alleles and maps to 151 oligo probes.

Gene

This transcript is a product of gene ENSG00000115207.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000359541.2	GTF3C2-001	3992	911aa	ENSP00000352536.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1749	C9JNH7 C9JQ12 Q53QN0 Q53SY8 Q8WUA4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000264720.3	GTF3C2-201	3842	911aa	ENSP00000264720.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1749	C9JNH7 C9JQ12 Q53QN0 Q53SY8 Q8WUA4	NM_001521.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000454704.1	GTF3C2-009	1440	420aa	ENSP00000393429.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q53SY8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000423998.1	GTF3C2-002	828	74aa	ENSP00000408174.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JQ12	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000457098.1	GTF3C2-012	762	142aa	ENSP00000409043.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000431028.1	GTF3C2-007	592	79aa	ENSP00000399339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000457748.1	GTF3C2-003	557	134aa	ENSP00000389518.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JNH7 C9JQ12	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000415683.2	GTF3C2-010	779	181aa	ENSP00000414422.2	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000495298.1	GTF3C2-006	1064	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000493511.1	GTF3C2-011	663	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000470115.1	GTF3C2-005	653	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000480989.1	GTF3C2-004	604	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000484680.1	GTF3C2-008	364	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 5, Transcript length: 779 bps, Translation length: 181 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000415683.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs6721927, that causes a stop codon to be gained in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HAPMAP-ASW, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HAPMAP-LWK, ESP6500:African_American.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000325086 (version 3)

Favourite species

All species

Recent locations

Transcript: ENST00000415683.2 GTF3C2-010

Summary