Transcript: ENST00000232219.2 RBP1-001

Description

retinol binding protein 1, cellular [Source:HGNC Symbol;Acc:9919]

Gene Synonyms

CRABP-I, CRBP, CRBP1, CRBPI, RBPC

Location

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 8523 variant alleles and maps to 369 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000483943.2	RBP1-003	1935	153aa	ENSP00000424813.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46925	P09455	NM_001130993.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000492918.1	RBP1-002	1487	157aa	ENSP00000429166.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS46926	P09455	NM_001130992.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000232219.2	RBP1-001	898	197aa	ENSP00000232219.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3110	-	NM_002899.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000487424.2	RBP1-004	1072	150aa	ENSP00000427492.1	Nonsense mediated decay		H0YAK8	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000474490.1	RBP1-005	462	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 898 bps, Translation length: 197 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS3110

Version

ENST00000232219.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000341495 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.