Transcript: ENST00000492164.1 TIMMDC1-005

Description

translocase of inner mitochondrial membrane domain containing 1 [Source:HGNC Symbol;Acc:1321]

Gene Synonyms

C3orf1, FLJ22597

Location

Chromosome 3: 119,217,422-119,242,477 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 1 domain and feature, is associated with 10518 variant alleles and maps to 283 oligo probes.

Gene

This transcript is a product of gene ENSG00000113845.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000494664.1	TIMMDC1-001	2394	285aa	ENSP00000418803.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS33831	Q9NPL8	NM_016589.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000493694.1	TIMMDC1-004	710	151aa	ENSP00000419510.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JU35	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000466984.1	TIMMDC1-008	605	150aa	ENSP00000420122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9JR82	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000264244.3	TIMMDC1-002	1271	175aa	ENSP00000264244.3	Nonsense mediated decay		G3XA94	-	-
ENST00000492164.1	TIMMDC1-005	725	90aa	ENSP00000418846.1	Nonsense mediated decay		F8WC42	-	-
ENST00000498399.1	TIMMDC1-009	684	38aa	ENSP00000420812.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000463927.2	TIMMDC1-006	670	65aa	ENSP00000417205.2	Nonsense mediated decay		F8WAU6	-	-
ENST00000486418.1	TIMMDC1-003	551	71aa	ENSP00000417083.1	Nonsense mediated decay		F8WB00	-	-
ENST00000469324.1	TIMMDC1-007	634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 725 bps, Translation length: 90 residues

Version

ENST00000492164.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Stop codons

This transcript has a variant, rs1131265, that causes a stop codon to be lost in at least 10% of HapMap or 1000 Genome population(s) CSHL-HAPMAP:HAPMAP-CHB, CSHL-HAPMAP:HapMap-YRI, CSHL-HAPMAP:HapMap-JPT, CSHL-HAPMAP:HapMap-CEU, CSHL-HAPMAP:HAPMAP-GIH, CSHL-HAPMAP:HAPMAP-LWK, ESP6500:European_American, CSHL-HAPMAP:HAPMAP-TSI, ESP6500:African_American, CSHL-HAPMAP:HAPMAP-CHD, CSHL-HAPMAP:HAPMAP-MKK, CSHL-HAPMAP:HapMap-HCB.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000355117 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000492164.1 TIMMDC1-005

Summary