Transcript: ENST00000520579.1 PDGFRB-002

Description

platelet-derived growth factor receptor, beta polypeptide [Source:HGNC Symbol;Acc:8804]

Gene Synonyms

CD140B, CD140b, IBGC4, IMF1, JTK12, PDGFR, PDGFR-1, PDGFR1

Location

Chromosome 5: 149,495,290-149,535,422 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 10 domains and features, is associated with 20510 variant alleles and maps to 883 oligo probes.

Gene

This transcript is a product of gene ENSG00000113721.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261799.4	PDGFRB-001	5717	1106aa	ENSP00000261799.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4303	E5RII0 E5RJ14 P09619	NM_002609.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517488.1	PDGFRB-004	822	146aa	ENSP00000429218.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJ14	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517957.1	PDGFRB-003	568	174aa	ENSP00000430715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RII0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520579.1	PDGFRB-002	3860	239aa	ENSP00000430026.1	Nonsense mediated decay		E5RH16 E5RII0 E5RJ14	-	-
ENST00000523456.1	PDGFRB-010	1023	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519575.1	PDGFRB-006	712	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517660.1	PDGFRB-011	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520851.1	PDGFRB-008	406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521723.1	PDGFRB-007	400	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520229.1	PDGFRB-005	738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522466.1	PDGFRB-009	296	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 4, Transcript length: 3,860 bps, Translation length: 239 residues

Version

ENST00000520579.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000381782 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000520579.1 PDGFRB-002

Summary