Transcript: ENST00000261799.4 PDGFRB-001

Description

platelet-derived growth factor receptor, beta polypeptide [Source:HGNC Symbol;Acc:8804]

Gene Synonyms

CD140B, CD140b, IBGC4, IMF1, JTK12, PDGFR, PDGFR-1, PDGFR1

Location

Chromosome 5: 149,493,400-149,535,423 reverse strand.

About this transcript

This transcript has 23 exons, is annotated with 48 domains and features, is associated with 21284 variant alleles and maps to 957 oligo probes.

Gene

This transcript is a product of gene ENSG00000113721.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000261799.4	PDGFRB-001	5717	1106aa	ENSP00000261799.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4303	E5RII0 E5RJ14 P09619	NM_002609.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000517488.1	PDGFRB-004	822	146aa	ENSP00000429218.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RJ14	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000517957.1	PDGFRB-003	568	174aa	ENSP00000430715.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		E5RII0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000520579.1	PDGFRB-002	3860	239aa	ENSP00000430026.1	Nonsense mediated decay		E5RH16 E5RII0 E5RJ14	-	-
ENST00000523456.1	PDGFRB-010	1023	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000519575.1	PDGFRB-006	712	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000517660.1	PDGFRB-011	611	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520851.1	PDGFRB-008	406	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000521723.1	PDGFRB-007	400	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000520229.1	PDGFRB-005	738	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000522466.1	PDGFRB-009	296	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 23, Coding exons: 22, Transcript length: 5,717 bps, Translation length: 1,106 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P09619

CCDS

This transcript is a member of the Human CCDS set: CCDS4303

Version

ENST00000261799.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000252332 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000261799.4 PDGFRB-001

Summary