Transcript: ENST00000540272.1 SLC15A3-004

Description

solute carrier family 15 (oligopeptide transporter), member 3 [Source:HGNC Symbol;Acc:18068]

Gene Synonyms

OCTP, PHT2, PTR3, hPTR3

Location

Chromosome 11: 60,710,978-60,714,238 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 1461 variant alleles and maps to 88 oligo probes.

Gene

This transcript is a product of gene ENSG00000110446.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000227880.3	SLC15A3-001	2115	581aa	ENSP00000227880.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7998	F5GZ36 F5H251 Q8IY34	NM_016582.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000537307.1	SLC15A3-003	801	247aa	ENSP00000437908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000538739.1	SLC15A3-005	691	149aa	ENSP00000441559.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZ36	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536491.1	SLC15A3-009	676	209aa	ENSP00000439535.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H251	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000536784.1	SLC15A3-007	456	43aa	ENSP00000441694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YG40	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000541505.1	SLC15A3-002	1807	456aa	ENSP00000445773.1	Nonsense mediated decay		F5GZ36 F5H1C8	-	-
ENST00000543406.1	SLC15A3-006	4579	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000540272.1	SLC15A3-004	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000544101.1	SLC15A3-008	549	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 566 bps,

Version

ENST00000540272.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000396368 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000540272.1 SLC15A3-004

Summary