Transcript: ENST00000395753.1 SLC1A2-002

Description

solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:HGNC Symbol;Acc:10940]

Gene Synonyms

EAAT2, GLT-1, GLT1

Location

Chromosome 11: 35,272,772-35,441,610 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 30 domains and features, is associated with 69104 variant alleles and maps to 694 oligo probes.

Gene

This transcript is a product of gene ENSG00000110436.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000278379.3	SLC1A2-001	11696	574aa	ENSP00000278379.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31459	A2A2U1 P43004	NM_004171.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395753.1	SLC1A2-002	11689	565aa	ENSP00000379102.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55756	A2A2U1 P43004	NM_001252652.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000395750.1	SLC1A2-004	11538	565aa	ENSP00000379099.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS55756	A2A2U1 P43004	NM_001195728.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000606205.1	SLC1A2-008	1890	563aa	ENSP00000476124.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQQ4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000449068.1	SLC1A2-006	685	199aa	ENSP00000406133.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		C9J9N5	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000464522.2	SLC1A2-003	607	91aa	ENSP00000435406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YEB1	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000531628.1	SLC1A2-007	597	199aa	ENSP00000436029.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000479543.1	SLC1A2-005	564	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-

Summary

Statistics

Exons: 12, Coding exons: 10, Transcript length: 11,689 bps, Translation length: 565 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P43004

CCDS

This transcript is a member of the Human CCDS set: CCDS55756

Version

ENST00000395753.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000258182 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000395753.1 SLC1A2-002

Summary