Transcript: ENST00000227524.4 PRPF19-001

Description

pre-mRNA processing factor 19 [Source:HGNC Symbol;Acc:17896]

Gene Synonyms

NMP200, PRP19, PSO4, SNEV, UBOX4, hPSO4

Location

Chromosome 11: 60,658,202-60,674,060 reverse strand.

About this transcript

This transcript has 16 exons, is annotated with 32 domains and features, is associated with 6727 variant alleles and maps to 569 oligo probes.

Gene

This transcript is a product of gene ENSG00000110107.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000227524.4	PRPF19-001	2157	504aa	ENSP00000227524.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7995	F5H2I0 Q9UMS4	NM_014502.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000541371.1	PRPF19-003	943	252aa	ENSP00000440266.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GY56 F5H2I0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000546152.1	PRPF19-002	814	104aa	ENSP00000446259.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H2I0	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535326.1	PRPF19-007	779	119aa	ENSP00000445435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGZ5	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000540473.1	PRPF19-006	169	45aa	ENSP00000443031.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0YGF3	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000539960.1	PRPF19-004	796	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000539180.1	PRPF19-005	441	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 16, Coding exons: 16, Transcript length: 2,157 bps, Translation length: 504 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UMS4

CCDS

This transcript is a member of the Human CCDS set: CCDS7995

Version

ENST00000227524.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000396334 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000227524.4 PRPF19-001

Summary