Transcript: ENST00000539918.1 ZBTB16-006

Description

zinc finger and BTB domain containing 16 [Source:HGNC Symbol;Acc:12930]

Gene Synonyms

PLZF, ZNF145

Location

Chromosome 11: 113,935,134-114,118,066 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 2 domains and features, is associated with 78503 variant alleles and maps to 168 oligo probes.

Gene

This transcript is a product of gene ENSG00000109906.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000335953.4	ZBTB16-001	2523	673aa	ENSP00000338157.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8367	F5H5Y7 F5H6C3 Q05516 Q71UL5 Q71UL6 Q71UL7	NM_006006.4	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000392996.2	ZBTB16-003	2287	673aa	ENSP00000376721.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS8367	F5H5Y7 F5H6C3 Q05516 Q71UL5 Q71UL6 Q71UL7	NM_001018011.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000544220.1	ZBTB16-004	773	115aa	ENSP00000437716.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H6C3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000535700.1	ZBTB16-005	572	148aa	ENSP00000443013.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5H5Y7 F5H6C3	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000539918.1	ZBTB16-006	757	55aa	ENSP00000445047.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000535379.1	ZBTB16-008	705	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000545851.1	ZBTB16-007	534	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000541602.1	ZBTB16-002	4427	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000535509.1	ZBTB16-009	727	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 6, Coding exons: 2, Transcript length: 757 bps, Translation length: 55 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENST00000539918.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000398945 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000539918.1 ZBTB16-006

Summary