Transcript: ENST00000394820.4 NFKB1-002

Description

nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 [Source:HGNC Symbol;Acc:7794]

Gene Synonyms

EBP-1, KBF1, NF-kB1, NF-kappa-B, NF-kappaB, NFKB-p105, NFKB-p50, NFkappaB, p105, p50

Location

Chromosome 4: 103,422,488-103,538,072 forward strand.

About this transcript

This transcript has 24 exons, is annotated with 40 domains and features, is associated with 46184 variant alleles and maps to 730 oligo probes.

Gene

This transcript is a product of gene ENSG00000109320.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000226574.4	NFKB1-001	4085	969aa	ENSP00000226574.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS3657	D6RC45 D6RF93 P19838	NM_003998.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000600343.1	NFKB1-013	4010	788aa	ENSP00000469340.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RF93 P19838	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000505458.1	NFKB1-003	3707	968aa	ENSP00000424790.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54783	D6RF93 P19838	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394820.4	NFKB1-002	3693	968aa	ENSP00000378297.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54783	D6RF93 P19838	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000507079.1	NFKB1-004	965	198aa	ENSP00000426147.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC45 D6RH30	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000508584.1	NFKB1-011	751	196aa	ENSP00000424815.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RF93	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000511926.1	NFKB1-005	609	74aa	ENSP00000420904.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RDI9	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000509165.1	NFKB1-007	557	144aa	ENSP00000423877.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RC45	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000510638.1	NFKB1-010	628	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000513803.1	NFKB1-008	612	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000504044.1	NFKB1-012	580	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-
ENST00000502367.1	NFKB1-009	456	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 24, Coding exons: 23, Transcript length: 3,693 bps, Translation length: 968 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P19838

CCDS

This transcript is a member of the Human CCDS set: CCDS54783

Version

ENST00000394820.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000253802 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000394820.4 NFKB1-002

Summary