Transcript: ENST00000441222.3 USP46-001

Description

ubiquitin specific peptidase 46 [Source:HGNC Symbol;Acc:20075]

Gene Synonyms

FLJ12552

Location

Chromosome 4: 53,457,138-53,525,502 reverse strand.

About this transcript

This transcript has 9 exons, is annotated with 9 domains and features, is associated with 28161 variant alleles and maps to 798 oligo probes.

Gene

This transcript is a product of gene ENSG00000109189.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000441222.3	USP46-001	7954	366aa	ENSP00000407818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47053	P62068	NM_022832.3	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451218.2	USP46-003	4622	339aa	ENSP00000390102.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7BZK6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000508499.1	USP46-005	1419	359aa	ENSP00000423244.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47054	P62068	NM_001134223.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000503060.1	USP46-004	2437	40aa	ENSP00000422018.1	Nonsense mediated decay		D6R9Z4	-	-
ENST00000514536.1	USP46-002	1589	40aa	ENSP00000426970.1	Nonsense mediated decay		D6R9Z4	-	-
ENST00000512656.1	USP46-008	467	56aa	ENSP00000425806.1	Nonsense mediated decay		D6RIX7	-	-
ENST00000504078.1	USP46-006	573	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000506707.1	USP46-007	536	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000502443.1	USP46-009	572	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 9, Coding exons: 9, Transcript length: 7,954 bps, Translation length: 366 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62068

CCDS

This transcript is a member of the Human CCDS set: CCDS47053

Version

ENST00000441222.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000361516 (version 2)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000441222.3 USP46-001

Summary