Transcript: ENST00000344627.6 SGCA-002

Description

sarcoglycan, alpha (50kDa dystrophin-associated glycoprotein) [Source:HGNC Symbol;Acc:10805]

Gene Synonyms

50-DAG, A2, ADL, DAG2, DMDA2, LGMD2D, SCARMD1, adhalin

Location

Chromosome 17: 48,243,366-48,253,289 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 8 domains and features, is associated with 5497 variant alleles and maps to 335 oligo probes.

Gene

This transcript is a product of gene ENSG00000108823.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000262018.3	SGCA-001	1432	387aa	ENSP00000262018.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS32679	Q16586	NM_000023.2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000451235.2	SGCA-201	1349	178aa	ENSP00000390371.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B7Z1L1	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000543315.1	SGCA-202	1060	263aa	ENSP00000444539.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		F5GZD3	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000344627.6	SGCA-002	1057	263aa	ENSP00000345522.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS45729	Q16586	NM_001135697.1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000504073.1	SGCA-011	696	160aa	ENSP00000422030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000511303.1	SGCA-008	668	196aa	ENSP00000426104.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H7C5V0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000502555.1	SGCA-004	1349	61aa	ENSP00000422817.1	Nonsense mediated decay		D6RAA4	-	-
ENST00000513821.1	SGCA-003	1090	298aa	ENSP00000426571.1	Nonsense mediated decay		E9PCT8	-	-
ENST00000512526.1	SGCA-010	577	58aa	ENSP00000426606.1	Nonsense mediated decay		-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000514934.1	SGCA-006	542	65aa	ENSP00000423168.1	Nonsense mediated decay		D6R9S3	-	-
ENST00000513942.1	SGCA-005	734	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000508382.1	SGCA-013	410	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript		-	-	-
ENST00000505964.1	SGCA-012	494	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 8, Coding exons: 7, Transcript length: 1,057 bps, Translation length: 263 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q16586

CCDS

This transcript is a member of the Human CCDS set: CCDS45729

Version

ENST00000344627.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:	OTTHUMT00000366842 (version 1)

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Favourite species

All species

Recent locations

Transcript: ENST00000344627.6 SGCA-002

Summary