Transcript: ENST00000578609.1 SLC6A4-004

Description

solute carrier family 6 (neurotransmitter transporter), member 4 [Source:HGNC Symbol;Acc:11050]

Gene Synonyms

5-HTT, 5-HTTLPR, 5HTT, HTT, OCD1, SERT, SERT1, hSERT

Location

Chromosome 17: 28,525,494-28,530,700 reverse strand.

About this transcript

This transcript has 2 exons, is associated with 2016 variant alleles and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSG00000108576.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq	Flags
ENST00000401766.2	SLC6A4-002	6543	630aa	ENSP00000385822.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000261707.3	SLC6A4-201	4516	630aa	ENSP00000261707.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11256	B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRU5 B3VRV0 B3VRV5 B3VRW0 J3KPR9 P31645 Q9NYN7	NM_001045.5	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000394821.2	SLC6A4-001	2160	618aa	ENSP00000378298.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		B3VRQ0 B3VRQ5 B3VRR0 B3VRR5 B3VRS0 B3VRS5 B3VRU0 B3VRV0 B3VRV5 B3VRW0 J3KPR9 Q9NYN7	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENST00000579221.1	SLC6A4-003	1069	72aa	ENSP00000463172.1	Nonsense mediated decay		B3VRQ0	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000578609.1	SLC6A4-004	566	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 566 bps,

Version

ENST00000578609.1

Type

Retained intron

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:	OTTHUMT00000447937 (version 1)

Favourite species

All species

Recent locations

Transcript: ENST00000578609.1 SLC6A4-004

Summary